This volume explores data from the applications of molecular biological methods and the applications of recent immunological and cytogenetic methods in Epstein-Barr Virus (EBV) that will offer readers possible new solutions to the unresolved problems in the EBV field. Chapters in this book cover topics such as: viral life cycle, latency, EBV-associated diseases and EBV diagnostics; in vitro methods including organotypic cultures for the analysis of EBV-epithelial cell interactions; identification of the interacting viral and cellular proteins using affinity purification-mass spectrometry methods; 3D telomere FISH; transcription analysis using high-throughput RNA sequencing, qPCR and nuclear run-on assay; analysis of viral and cellular microRNAs; isolation and characterization of exosomes and the assessment of their function; characterization of the viral genome by terminal repeat analysis and sequencing; the use of chromatin immunoprecipitation coupled sequencing (ChIP-Seq) for theanalysis of Zta-DNA interactions; epigenetic analysis by bisulfite sequencing and ChIP; novel in vivo models for the study of EBV infection; and how immunological, virological, tissue culture and molecular methods can be combined to yield Good Manufacturing Practice-compliant EBV-specific T cells for the immunotherapy of EBV-associated post-transplant lymphoproliferative diseases (PTLD). Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.Cutting-edge and comprehensive, Epstein Barr-Virus: Methods and Protocols is a valuable resource for anyone who is interested in this fascinating and evolving field.

Includes cutting-edge methods and protocols

6. The Use of 3D Telomere FISH for the Characterization of the Nuclear Architecture in EBV-Positive Hodgkin's LymphomaHans Knecht and Sabine Mai7. Analysis of EBV Transcription Using High-Throughput RNA SequencingTina O'Grady, Melody Baddoo, and Erik K. Flemington8. Analysis of Viral Promoter Usage in EBV-Infected Cell Lines: A Comparison of qPCR following Conventional RNA Isolation and Nuclear Run-On AssayKalman Szenthe and Ferenc Banati9. Analysis of Viral and Cellular MicroRNAs in EBV Infected CellsRebecca L. Skalsky10. Isolation and Characterization of Exosomes Released by EBV Immortalized CellsGulfaraz Khan and Waqar Ahmed11. Functional Analysis of Exosomes Derived from EBV-Infected CellsGulfaraz Khan and Pretty S. Philip12. Terminal Repeat Analysis of EBV GenomesFerenc Bánáti, Anita Koroknai, Kálmán Szenthe13. Characterization of EBV Promoters and Coding Regions by Sequencing PCR-Amplified DNA FragmentsKalman Szenthe and Ferenc Bánáti14. The Use of Chromatin Precipitation Coupled to DNA Sequencing (ChIP-Seq) for the Analysis of Zta Binding to the Human and EBV GenomeAnja Godfrey, Sharada Ramasubramanyan, and Alison J. Sinclair15. Analysis of Viral Epigenotypes Using Bisulfite Sequencing: A Detailed Protocol for the Crucial Bisulfite Modification and PCR Amplification StepsDaniel Salamon