Managing Your Biological Data with Python
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ISBN-13:
9781439880937
Veröffentl:
2014
Erscheinungsdatum:
18.03.2014
Seiten:
560
Autor:
Allegra Via
Gewicht:
829 g
Format:
234x154x43 mm
Sprache:
Englisch
Beschreibung:
Requiring no prior programming experience, this text empowers biologists and other life scientists to work with biological data on their own using the Python language. The book teaches them not only how to program but also how to manage their data. It shows how to read data from files in different formats, analyze and manipulate the data, and write the results to a file or computer screen. Every piece of code in the text is aimed at solving real biological problems.
Getting Started: The Python Shell. Your First Python Program. Data Management: Analyzing a Data Column. Parsing Data Records. Searching Data. Filtering Data. Managing Tabular Data. Sorting Data. Pattern Matching and Text Mining. Modular Programming: Divide a Program into Functions. Managing Complexity with Classes. Debugging. Using External Modules: The Python Interface to R. Building Program Pipelines. Writing Good Programs. Data Visualization: Creating Scientific Diagrams. Creating Molecule Images with PyMOL. Manipulating Images. Biopython: Working with Sequence Data. Retrieving Data from Web Resources. Working with 3D Structure Data. Cookbook. Appendices.
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